get_gc {cubar}

GC contents

Description

Calculate GC content of the whole sequences.

Usage

get_gc(cf)

Arguments

cf

matrix of codon frequencies as calculated by 'count_codons()'.

Value

a named vector of GC contents.

Examples

# estimate GC content of yeast genes
cf_all <- count_codons(yeast_cds)
gc <- get_gc(cf_all)
head(gc)
hist(gc)