pairwiseV {ctrlGene} | R Documentation |
Calculates V(n+1/n) values
Description
Useful for establishing the quality of your normalization regime. See Vandesompele 2002 for advice on interpretation.
Usage
pairwiseV(expression, ctVal = TRUE)
Arguments
expression |
a matrix of expression levels. Each row corresponds to a sample and each column to a gene. |
ctVal |
a logical value indicating data type. If ct-values are input, ctVal=TRUE, otherwise, ctVal=FALSE. |
Value
A Series of values [V2/3, V3/V4, V4/V5, ...].
References
Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F (2002) <doi: 10.1186/gb-2002-3-7-research0034>.
Examples
FIB
pairwiseV(FIB,ctVal=FALSE)
FIBct
pairwiseV(FIBct)
[Package ctrlGene version 1.0.1 Index]