pairwiseV {ctrlGene}

R Documentation

Calculates V(n+1/n) values

Description

Useful for establishing the quality of your normalization regime. See Vandesompele 2002 for advice on interpretation.

Usage

pairwiseV(expression, ctVal = TRUE)

Arguments

expression	a matrix of expression levels. Each row corresponds to a sample and each column to a gene.
ctVal	a logical value indicating data type. If ct-values are input, ctVal=TRUE, otherwise, ctVal=FALSE.

Value

A Series of values [V2/3, V3/V4, V4/V5, ...].

References

Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F (2002) <doi: 10.1186/gb-2002-3-7-research0034>.

Examples

FIB
pairwiseV(FIB,ctVal=FALSE)
FIBct
pairwiseV(FIBct)

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