plot.gmci {ctmcd}

Plot Function for Generator Matrix Confidence / Credibility Interval Objects

Description

Function for visualizing the boundaries of generator matrix confidence / credibility intervals

Usage

## S3 method for class 'gmci'
plot(x, mattext, col = c("grey", "red"), main, las = 1, xlab = "To",
ylab = "From", xnames, ynames, cex = 1, fig = 2, opacity_factor, ...)

Arguments

x

a generator matrix confidence / credibility interval object

mattext

optional: matrix of strings replacing the parameter estimates

col

two element vector of basis colors for positive and negative parameter estimate entries

main

optional: plot title

las

orientation of x and y axis elements

xlab

x axis name

ylab

y axis name

xnames

description of x axis elements

ynames

description of y axis elements

cex

font size

fig

number of significant figures to be plotted

opacity_factor

two element vector for specification of opacity for positive and negative parameter entry highlighting (must be greater than zero)

...

additional arguments

Value

no value, plot function

Author(s)

Marius Pfeuffer

See Also

print.gmci, plotM

Examples

data(tm_abs)

## Maximum Likelihood Generator Matrix Estimate
gm0=matrix(1,8,8)
diag(gm0)=0
diag(gm0)=-rowSums(gm0)
gm0[8,]=0

gmem=gm(tm_abs,te=1,method="EM",gmguess=gm0)
plot(gmem)

## Confidence Interval
ciem=gmci(gmem,alpha=0.05)
plot(ciem)