prep_stringdb {crosstalkr}

Prepare Stringdb for use in analyses

Description

Basically a wrapper around the get_graph method from the stringdb package

Usage

prep_stringdb(
  cache = NULL,
  edb = "default",
  min_score = 200,
  version = "11.5",
  species = "homo sapiens"
)

Arguments

cache

A filepath to a folder downloaded files should be stored

edb

ensemble database object

min_score

minimum connectivity score for each edge in the network.

version

stringdb version

species

species code either using latin species name or taxon id

Value

igraph object built from the adjacency matrix downloaded from stringdb.