build_left_alleleplot {crosshap}

Left SNP-allele plot

Description

build_left_alleleplot() builds a horizontal plot displaying mean allelic frequencies (reference/alternate/missing/heterozygous) of all SNP loci, grouped by marker group. Makes use of $Varfile information from a HapObject created by run_haplotyping(). This is an internal function called by crosshap_viz(), though can be called separately to build a stand-alone plot.

Usage

build_left_alleleplot(HapObject, epsilon, hide_labels = TRUE)

Arguments

HapObject

Haplotype object created by run_haplotyping().

epsilon

Epsilon matching the haplotype object used for umap_in.

hide_labels

If TRUE, legend is hidden.

Value

A ggplot2 object.

Examples

build_left_alleleplot(HapObject, epsilon = 0.6, hide_labels = FALSE)