HapObject {crosshap}

Example Haplotype object

Description

A haplotyping object created by run_haplotyping() for example cqProt-003 soy data

Usage

HapObject

Format

A haplotype (S3) object containing results needed for haplotype visualization across five epsilon values (0.2,0.4,0.6,0.8,1)

epsilon

Epsilon value chosen for haplotyping with DBSCAN

MGmin

MGmin value (minPts) chosen for haplotyping with DBSCAN

Hapfile

Summary of Marker Groups defining haplotype combinations

Indfile

Haplotype assignments for individuals

Varfile

Marker Group assignments for SNPs, with additional calculated information