c19.genomic.data {covid19.analytics} | R Documentation |
function to obtain genomic data from SARS-CoV-2019
Description
function to obtain genomic data from SARS-CoV-2019
Usage
c19.genomic.data(src = "livedata", accOnly = TRUE)
Arguments
src |
argument to indicate what sources are going to be used for retrieving the data: "livedata", "repo" or "local" 'livedata' will access NCBI servers to acquire the latest possible data, this may incur in significant longer times 'repo' will access an updated replica of the data from a github repository (faster but not necessarily upto the latest udpates) 'local' will access previously archived records within teh package (fastest but not updated) |
accOnly |
boolean indicator for getting only accession codes or whole records |
Value
a list containing reference genome, annotation data, nucleotides, proteins and list of SRA runs
[Package covid19.analytics version 2.1.3.3 Index]