SharedCounts {countland}

Combine groups of genes with similar counts by clustering and summing.

Description

Combine groups of genes with similar counts by clustering and summing.

Usage

SharedCounts(C, n_clusters, n_cells = 100, subsample = TRUE)

Arguments

C

countland object

n_clusters

number of clusters

n_cells

number of cells to sample for gene clustering

subsample

if TRUE, use subsampled counts (default), otherwise use counts

Value

countland object with slots shared_counts, sum_sharedcounts, sum_sharedcounts_all

Examples

gold_path <- system.file("testdata", package = "countland", mustWork = TRUE)
gold.data <- Seurat::Read10X(data.dir = gold_path)
C <- countland(gold.data)
C <- SharedCounts(C,n_clusters=10,subsample=FALSE)