RankMarkerGenes {countland} | R Documentation |
Rank the top marker genes for each cluster from spectral clustering.
Description
Rank the top marker genes for each cluster from spectral clustering.
Usage
RankMarkerGenes(C, method = "prop-zero", subsample = FALSE)
Arguments
C |
countland object |
method |
|
subsample |
if TRUE, use subsampled counts, otherwise use counts (default=FALSE) |
Value
countland object with slots marker_genes
and marker_full
Examples
gold_path <- system.file("testdata", package = "countland", mustWork = TRUE)
gold.data <- Seurat::Read10X(data.dir = gold_path)
C <- countland(gold.data)
C <- Dot(C)
C <- Embed(C,n_components=5)
C <- Cluster(C,n_clusters=3)
C <- RankMarkerGenes(C,method='prop-zero',subsample=FALSE)
[Package countland version 0.1.2 Index]