effect.sizes {cooccur} | R Documentation |

##
Function to extract species pairwise effect sizes from an object of class `cooccur`

.

### Description

Calculate standardized and raw effect sizes from an object of class `cooccur`

.

### Usage

```
effect.sizes(mod, standardized = TRUE, matrix = FALSE)
```

### Arguments

`mod` |
Object of class |

`standardized` |
Logical. Should the effect sizes be standardized? |

`matrix` |
Logical. Should the effect sizes be returned in a distance matrix? The alternative is a list of pairs. |

### Value

Returns either a data.frame of species pairs and effects sizes or a distance matrix with the rows and columns ordered from the order of species in the original community data matrix.

### Author(s)

Daniel M Griffith

### Examples

```
#data(finches)
#cooccur.finches <- cooccur(mat=finches,
# type="spp_site",
# thresh=FALSE,
# spp_names=TRUE)
#effect.sizes(cooccur.finches,matrix=TRUE)
```

[Package

*cooccur*version 1.3 Index]