stableTreeClusters {conos}

Determine number of detectable clusters given a reference walktrap and a bunch of permuted walktraps

Description

Determine number of detectable clusters given a reference walktrap and a bunch of permuted walktraps

Usage

stableTreeClusters(
  refwt,
  tests,
  min.threshold = 0.8,
  min.size = 10,
  n.cores = 30,
  average.thresholds = FALSE
)

Arguments

refwt

reference walktrap result

tests

a list of permuted walktrap results

min.threshold

numeric Min detectability threshold (default=0.8)

min.size

numeric Minimum cluster size (number of leafs) (default=10)

n.cores

numeric Number of cores (default=30)

average.thresholds

boolean Report a single number of detectable clusters for averaged detected thresholds (default=FALSE) (a list of detected clusters for each element of the tests list is returned by default)

Value

number of detectable stable clusters