scanKModularity {conos}R Documentation

Scan joint graph modularity for a range of k (or k.self) values Builds graph with different values of k (or k.self if scan.k.self=TRUE), evaluating modularity of the resulting multilevel clustering NOTE: will run evaluations in parallel using con$n.cores (temporarily setting con$n.cores to 1 in the process)

Description

Scan joint graph modularity for a range of k (or k.self) values Builds graph with different values of k (or k.self if scan.k.self=TRUE), evaluating modularity of the resulting multilevel clustering NOTE: will run evaluations in parallel using con$n.cores (temporarily setting con$n.cores to 1 in the process)

Usage

scanKModularity(
  con,
  min = 3,
  max = 50,
  by = 1,
  scan.k.self = FALSE,
  omit.internal.edges = TRUE,
  verbose = TRUE,
  plot = TRUE,
  ...
)

Arguments

con

Conos object to test

min

numeric Minimal value of k to test (default=3)

max

numeric Value of k to test (default=50)

by

numeric Scan step (default=1)

scan.k.self

boolean Whether to test dependency on scan.k.self (default=FALSE)

omit.internal.edges

boolean Whether to omit internal edges of the graph (default=TRUE)

verbose

boolean Whether to provide verbose output (default=TRUE)

plot

boolean Whether to plot the output (default=TRUE)

...

other parameters will be passed to con$buildGraph()

Value

a data frame with $k $m columns giving k and the corresponding modularity


[Package conos version 1.4.2 Index]