plotComponentVariance {conos}R Documentation

Plot fraction of variance explained by the successive reduced space components (PCA, CPCA)

Description

Requires buildGraph() or updatePairs() to be ran first with the argument score.component.variance=TRUE.

Usage

plotComponentVariance(
  conos.obj,
  space = "PCA",
  plot.theme = ggplot2::theme_bw()
)

Arguments

conos.obj

conos object

space

character Reduction space to be analyzed (currently, component variance scoring is only supported by PCA and CPCA) (default='PCA')

plot.theme

ggplot theme (default=ggplot2::theme_bw()). Refer to <https://ggplot2.tidyverse.org/reference/ggtheme.html> for more details.

Value

ggplot


[Package conos version 1.4.2 Index]