plotClusterBarplots {conos}R Documentation

Plots barplots per sample of composition of each pagoda2 application based on selected clustering

Description

Plots barplots per sample of composition of each pagoda2 application based on selected clustering

Usage

plotClusterBarplots(
  conos.obj = NULL,
  clustering = NULL,
  groups = NULL,
  sample.factor = NULL,
  show.entropy = TRUE,
  show.size = TRUE,
  show.composition = TRUE,
  legend.height = 0.2
)

Arguments

conos.obj

A conos object (default=NULL)

clustering

name of clustering in the current object (default=NULL)

groups

arbitrary grouping of cells (to use instead of the clustering) (default=NULL)

sample.factor

a factor describing cell membership in the samples (or some other category) (default=NULL). This will default to samples if not provided.

show.entropy

boolean Whether to include entropy barplot (default=TRUE)

show.size

boolean Whether to include size barplot (default=TRUE)

show.composition

boolean Whether to include composition barplot (default=TRUE)

legend.height

numeric Relative hight of the legend panel (default=0.2)

Value

a ggplot object


[Package conos version 1.4.2 Index]