findSubcommunities {conos}R Documentation

Increase resolution for a specific set of clusters

Description

Increase resolution for a specific set of clusters

Usage

findSubcommunities(
  con,
  target.clusters,
  clustering = NULL,
  groups = NULL,
  method = leiden.community,
  ...
)

Arguments

con

conos object

target.clusters

clusters for which the resolution should be increased

clustering

name of clustering in the conos object to use. Either 'clustering' or 'groups' must be provided (default=NULL).

groups

set of clusters to use. Ignored if 'clustering' is not NULL (default=NULL).

method

function, used to find communities (default=leiden.community).

...

additional params passed to the community function

Value

set of clusters with increased resolution


[Package conos version 1.4.2 Index]