plot.S2CFA {confreq}

S3 plot for S2CFA

Description

S3 plot method for object of class"S2CFA"

Usage

## S3 method for class 'S2CFA'
plot(
  x,
  type = "ex.fisher.test",
  fill = c("red", "grey"),
  adjalpha = "bonferroni",
  ...
)

Arguments

x

object of class"S2CFA"

type

character with default type="ex.fisher.test", to return wether the observed pattern are 'discriminating Types' or not significant at all based on the respective p-value. Another option for type is type="pChi".

fill

a vector of (two) colors defining the coloring of discriminating 'Types' (default "red"), or not discriminating cells (default "grey") in the plot.

adjalpha

character with default adjalpha = "bonferroni". Selector for the type of alpha adjustment for multiple testing. Possible options are: adjalpha = "none", for no adjustment; adjalpha = "bonferroni", for bonferroni adjustment (default); adjalpha = "holm", for alpha adjustment according to Holm (1979); other options to come ... .

...

other parameters passed trough.

Value

a plot visualizing the results.

References

Holm, S. (1979). A simple sequentially rejective multiple test procedure. Scandinavian Journal of Statistics, 6(2), 65–70.

Bonferroni, C. E. (1935). Il calcolo delle assicurazioni su gruppi di teste. In S.O. Carboni (Ed.), Studi in Onore del Professore Salvatore Ortu Carboni (S. 13–60). Roma, Tipografia del Senato: Bardi.