gensearch {colocalized}

Whole genome search.

Description

Search the whole genome for clusters of colocalized TF binding sequences.

Usage

gensearch(choose, n, cores)

Arguments

choose

List of .bed tables

n

The cut-off distance

cores

Number of cores for parallel processing. Leaving this blank causes the program to use default (series) processing

Value

Table containing the addresses (as one dimensional intervals) of the members of every cluster, with some annotation data.