chromsearch {colocalized} | R Documentation |
Search one chromsome
Description
Search a single chromosome for clusters of TF binding sequences. Example produces a null result, test the same complex on "chr9" for a positive reading.
Usage
chromsearch(choose, n, chrom)
Arguments
choose |
List of .bed tables |
n |
Cut-off distance between colocalized sequences |
chrom |
Chromosome to be searched given as e.g. "chr19" |
Value
A table containing the addresses (as one dimensional intervals) of the members of every cluster, with some annotation data.
Examples
complex<-list(nfkb1,nfkb2,relb)
chromsearch(complex,150,"chrY")
[Package colocalized version 0.2.0 Index]