Markov chain Monte Carlo burn-in based on "bridge" statistics


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Documentation for package ‘codadiags’ version 1.0

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codadiags-package Markov chain Monte Carlo burn-in based on "bridge" statistics.
ad.cdf Anderson-Darling cumulative density function, copy from ADGofTest package.
add.transient Add a transient to a given mcmc sequence
AR1 Generate auto-regressive order 1 sequence
autocorr1 Basic auto-correlation estimation of a given sequence
bay.cdf Bay cumulative density function, corresponding to -B(t+)/B(t-), where B(t+) (resp. B(t-)) is the maximum (resp.minimum) of B(t)/(t*(1-t)).
bridgestat.diag Iterative truncation procedure based on a bridge statistic.
brownianbridge Compute the so called (abusively) "Brownian bridge" process.
codadiags Markov chain Monte Carlo burn-in based on "bridge" statistics.
cvm.cdf Cramer von Mises cumulative density function, import from coda package.
ks.cdf Kolmogorov-Smirnov cumulative density function, copy from stats::ks.test.
loglikbridge Compute the so called "Log-likelihood bridge" process.
maxinv.bay.cdf CDF of max(x,1/x) (=cdf(x)-cdf(1)+cdf(1)-cdf(1/x)) where x is 'Bay' distributed
null.lim.cdf Asymptotic CDF for a given statistic
null.param.cdf Build the null CDF (cumulative density function) for a given statistic, for arbitrary length and autocorrelation sequence.
studentbridge Compute the so called "Student bridge" process.
transient.test Perform a stationary test to check for an initial burn-in in a sequence