simulator_ms {coala}

Simulator: ms

Description

This function adds the simulator 'ms' to the list of available simulators. In order to use 'ms', you need to install the CRAN package phyclust. By default, 'scrm' will be preferred over 'ms'. Raise the priority of 'ms' to change this behavior.

Usage

activate_ms(priority = 300)

Arguments

priority

The priority for this simulator. If multiple simulators can simulate a model, the one with the highest priority will be used.

References

Richard R. Hudson. Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics (2002) 18 (2): 337-338 doi:10.1093/bioinformatics/18.2.337

See Also

Other simulators: simulator_msms, simulator_scrm, simulator_seqgen

Examples

# To prefer ms to scrm:
## Not run: activate_ms(priority = 500)