clustermole_overlaps {clustermole}

Cell types based on overlap of marker genes

Description

Perform overrepresentation analysis for a set of genes compared to all cell type signatures.

Usage

clustermole_overlaps(genes, species)

Arguments

genes

A vector of genes.

species

Species: hs for human or mm for mouse.

Value

A data frame of enrichment results with hypergeometric test p-values.

Examples

my_genes <- c("CD2", "CD3D", "CD3E", "CD3G", "TRAC", "TRBC2", "LTB")
my_overlaps <- clustermole_overlaps(genes = my_genes, species = "hs")
head(my_overlaps)