clusterhap {clusterhap}

clusterhap function identifies haplotypes within QTL.

Description

This function groups together all individuals of a population with the same haplotype.

Usage

clusterhap(x, Print = FALSE)

Arguments

x

a data.frame that should be loaded with read.table function. Each row represents the individuals while each column represents the markers. The first column contains the names of the genotypes.

Print

option for print the clusterhap result. The default is FALSE

Details

Each group contains individual with the same allele in each SNP, whether or not missing data.

Value

a matrix with the haplotypes

Author(s)

Gaston Quero, Sebastian Simondi, Victoria Bonnecarrere, Lucia Gutierrez.

See Also

read.table function

Examples

#### Simple simulated data
data("sim_qtl")
clusterhap(sim_qtl, Print=TRUE)

### Real experimental data

## Not run: 
data(rice_qtl)
clusterhap(rice_qtl)

## End(Not run)