Package: clusterhap Type: Package Title: Clustering Genotypes in Haplotypes Version: 0.1 Date: 2016-05-13 Author: Gaston Quero and Sebastian Simondi , with contributions from Victoria Bonnecarrere and Lucia Gutierrez Maintainer: Gaston Quero Description: One haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL (Quantitative Trait Loci). clusterhap groups together all individuals of a population with the same haplotype. Each group contains individual with the same allele in each SNP, whether or not missing data. Thus, clusterhap groups individuals, that to be imputed, have a non-zero probability of having the same alleles in the entire sequence of SNP's. Moreover, clusterhap calculates such probability from relative frequencies. Depends: R (>= 2.10) License: GPL-3 LazyData: TRUE RoxygenNote: 5.0.1 Suggests: knitr, rmarkdown, testthat VignetteBuilder: knitr Imports: graphics, utils NeedsCompilation: no Packaged: 2016-05-15 21:35:40 UTC; GQ Repository: CRAN Date/Publication: 2016-05-16 14:37:36