| cloudms2 {cloudUtil} | R Documentation |
Benchmark data set for cloudUtil
Description
The data set provides the measurements of benchmark using three compute infrastructers namely uzh.ch Schroedinger, Amazon EC2 (region us-east.), and the FGCZ internal compute server. The number crunshing was done by doing tandem mass spectra peptide sequence assignments of a large scale proteomics Drosophila experiment similar to the data processing published here [E. Brunner, et. al., NBT, 2007] having approx. 1800 (LC)-MS/MS runs, 8474960 fragment ion spectra(tandem MS or MS2), identidying 498000 redundant and 72281 distinct peptides, and 9124 proteins. The data volume is approx. 0.3TB splitted into ~1800 jobs.
Format
A data frame with 10969 rows and 15 variables
References
http://fgcz-transfer.uzh.ch/~cpanse/2011-10-24–pCloud.pdf
http://www.nature.com/nbt/journal/v25/n5/abs/nbt1300.html