getExtraDirs {clinDataReview}

Get extra directory(ies) required for the clinical data review report

Description

By default, the 'figures', 'tables' and patient profiles folders (patientProfilePath parameter in the general config file, if specified) in the input directory are considered.

Usage

getExtraDirs(inputDir = ".", configDir = file.path(inputDir, "config"))

Arguments

inputDir

String with input directory, working directory by default.

configDir

String with directory with config files, by default a 'config' folder in inputDir.
It should contain a general 'config.yml' file and dedicated 'config-[X].yml' for each chapter. The order of each chapter is specified in the 'config' slot in the general general 'config.yml'.

Value

Character vector with extra directories required by the report

Author(s)

Laure Cougnaud