predict.fitEmax {clinDR} R Documentation

## Estimated mean/proportion and confidence intervals derived from the maximum likelihood fit of a 3- or 4- parameter Emax model.

### Description

The estimated means from an Emax model is computed along with confidence bounds. The results are computed for a vector of input dose levels. For binary outcomes, the results are computed on the logit scale and then back-transformed.

### Usage

## S3 method for class 'fitEmax'
predict(object,dosevec,clev=0.9,
int=1,dref=0, xvec=NULL, ...)


### Arguments

 object Output of fitEmax with class "fitEmax". dosevec Vector of doses to be evaluated. clev Confidence level for intervals about the estimated mean/proportion at each dosevec. int The index for the protocol (intercept) to use for the predictions dref Differences in response between doselev and dref are computed. xvec The vector of centered baseline values for the prediction model when xbase was specified in the model fit. Centering must be done using the protocol-specific means consistent with int. See details for the default calculations when xvec is not specified. ... No additonal parameters will be utilized.

### Details

Model estimates, standard errors, and confidence bounds are computed with the function SeEmax.

If baseline covariates were included in the fit and xvec is not specified, then the predicted value is the mean of the predictions for all patients in the specified protocol. Note that the protocol must be specified, or the prediction defaults to patients from the first protocol. Note that for binary data, the distinction between the mean of the predicted values and the predicted value as the mean of the covariates can be important.

### Value

A list with estimated dose group means/proportions, lower bound, upper bound, SE, and corresponding values for differences with the reference dose. One value for each dose in dosevec.

### Author(s)

Neal Thomas

nls

### Examples


## Not run:
## this example changes the random number seed
doselev<-c(0,5,25,50,100,350)
n<-c(78,81,81,81,77,80)

### population parameters for simulation
e0<-2.465375
ed50<-67.481113

dtarget<-100
diftarget<-9.032497
emax<-solveEmax(diftarget,dtarget,log(ed50),1,e0)

sdy<-8.0
pop.parm<-c(log(ed50),emax,e0)
dose<-rep(doselev,n)
meanlev<-emaxfun(dose,pop.parm)

y<-rnorm(sum(n),meanlev,sdy)

testout<-fitEmax(y,dose,modType=4)
predout<-predict(testout,dosevec=c(20,80),int=1)

## End(Not run)



[Package clinDR version 2.3.5 Index]