compileStanModels {clinDR} R Documentation

## Compile rstan Emax models after package clinDR is installed

### Description

Compile rstan code for Emax models used by fitEmaxB and emaxsimB. This function must be executed once after the clinDR package is installed.

### Usage

compileStanModels()


### Details

The compiled models are stored in the models sub-directory of the installed clinDR package. The user must have write-access to the package directory. The package can be installed in a user-specified directory if the user does not have write privileges for the default package directory. Execution requires several minutes. The compiled models are 32- or 64- bit specific. Both sets must be compiled if the compiled R type is changed (they are stored in sub-directories comp32 or comp64). It is recommended to execute the function again if the package rstan is updated.

Package rstan must be functional for CompileStanModels to be successful. See https://github.com/stan-dev/rstan/wiki/RStan-Getting-Started. Note especially the instructions for installing Rtools, which is required for execution on a Windows machine.

### Value

'basemodel.rds' and 'mrmodel.rds' should be created in the package directory in the sub-directory 'models'.

### Author(s)

Neal Thomas

[Package clinDR version 2.3.5 Index]