text {chromseq}

Fasta file of chromosome sequence

Description

A downsampled dataset containing the hg19 chromosome sequence from the hg19 blacklist. The hg19 blacklist is obtained from the supplementary dataset from "Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion." The dataset is sent to the UCSC Table Browser for obtaining the corresponding sequence file. The sequence file is processed with replaceText function to simplify the fasta id. To best illustate the usage, the sequence file is downsampled.

Usage

data(text)

Format

A character sequence with 2099 elements.

References

Satpathy A T, Granja J M, Yost K E, et al. (2019) Nature biotechnology 37, 925–936. (PubMed)

Examples

data(text)