bg {chipPCR} | R Documentation |
Class "bg"
Description
An S4 class containing the output bg.max
function.
Value
An object containing result of the bg.max
function.
Slots
.Data
:"matrix"
which columns represent respectively cycle number, raw fluorescence data, first derivative and second derivative.bg.start
:-
"numeric"
value representing start of the background range. bg.stop
:-
"numeric"
value representing end of the background range. bg.corr
:-
"numeric"
a value which helps to tweak on the suggested background value ofbg.max
. fluo
:-
"numeric"
a value of fluorescence at the end of amplification. amp.stop
:-
"numeric"
value representing end of the amplification .
Methods
- plot
signature(x = "bg")
: plots background information. Seeplot.bg
- show
signature(object = "bg")
: prints only.Data
slot of the object.- summary
signature(object = "bg")
: prints information about object prettier thanshow
and allows easy access to some slots. Seesummary.bg
Author(s)
Stefan Roediger, Michal Burdukiewicz
See Also
Examples
res <- AmpSim(cyc = 1:40, Cq = 25)
tmp <- bg.max(res)
summary(tmp)
plot(tmp)