hommelFast {cherry}

R Documentation

Calculates adjusted p-values of Hommel's method efficiently.

Description

Calculates adjusted p-values of Hommel's method efficiently.

Usage

 hommelFast (pvalues, simes = TRUE) 

Arguments

pvalues	A vector of p-values.
simes	If TRUE, a Simes' test is used, if FALSE Hommel's test is used.

Value

Returns a hommel object.

Author(s)

Rosa Meijer: r.j.meijer@lumc.nl

Examples

  
  #Generate a vector of pvalues
  set.seed(1)
  n <- 1000
  pvalues <- c(runif(0.50*n,0,0.001), runif(0.50*n,0,1))
  
  #Create an hommel object in which the adjusted p-values are stored, based on a Simes'test
  #(or Hommel's test, by choosing simes = FALSE):
  hom <- hommelFast(pvalues, simes = TRUE)
  
  #Retrieve the first 10 adjusted p-values by using the \code{p.adjust} method 
  # from the hommel package. Note that they are not sorted
  hommel::p.adjust(hom)[1:10]

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