simulated_umis {cellpypes}

Simulated scRNAseq data

Description

This data serves to develop cellpypes and to illustrate its functionality. I made it up entirely.

Usage

simulated_umis

Format

A list with 4 entries:

raw

Raw (unnormalized) UMI counts for a handful of genes, last row are totalUMI.

neighbors

Indices of each cell's 50 nearest neighbors.

embed

Simulated UMAP embedding.

celltype

Cell type label that I used to simulate the data.

Source

Very simple simulation (c.f. data-raw/simulated_umis.R in source code).