get_bioactivity_details_batch {ccdR}

Retrieve bioactivity data from DTXSID or AEID batch

Description

Retrieve bioactivity data from DTXSID or AEID batch

Usage

get_bioactivity_details_batch(
  DTXSID = NULL,
  AEID = NULL,
  SPID = NULL,
  m4id = NULL,
  API_key = NULL,
  Server = NULL,
  rate_limit = 0L,
  verbose = FALSE
)

Arguments

DTXSID

A list of chemical identifier DTXSIDs.

AEID

A list of assay endpoint identifiers AEIDs.

SPID

A list of ChemSpider chemical inputs

m4id

A list of chemical identifier m4ids

API_key

The user-specific API key.

Server

The root address for the API endpoint

rate_limit

Number of seconds to wait between each request

verbose

A logical indicating if some “progress report” should be given.

Value

A named list of data.frames containing bioactivity information for the chemicals with DTXSID or assays with AEID matching the input parameter.

Examples

# Pull bioactivity details for multiple chemicals
dtxsid <- c('DTXSID7020182', 'DTXSID2021315')
batch_bioactivity <- get_bioactivity_details_batch(DTXSID = dtxsid)
# Pull bioactivity details for multiple assays
batch_bioactivity <- get_bioactivity_details_batch(AEID = c(159, 160))