catNetworkDistance-class {catnet} | R Documentation |

This class contains a list of `catNetwork`

s and it is the output format of `cnEvaluate`

function

See in the manual of `cnCompare`

function for description of different distance criteria.

`hamm`

:an

`integer`

, the hamming distance between the parent matrices of the found networks and the original network.`hammexp`

:an

`integer`

, the hamming distance between the exponents of the parent matrices.`tp`

:an

`integer`

, the number of true positives directed edges.`fp`

:an

`integer`

, the number of false positives directed edges.`fn`

:an

`integer`

, the number of false negatives directed edges.`sp`

:a

`numeric`

, the specificity.`sn`

:a

`numeric`

, the sensitivity.`fscore`

:a

`numeric`

, the F-score.`skel.tp`

:an

`integer`

, the number of true positives undirected edges.`skel.fp`

:an

`integer`

, the number of false positives undirected edges.`skel.fn`

:an

`integer`

, the number of false negatives undirected edges.`order.fp`

:an

`integer`

, the number of false positive order relations.`order.fn`

:an

`integer`

, the number of false negative order relations.`markov.fp`

:an

`integer`

, the number of false positive Markov pairs.`markov.fn`

:an

`integer`

, the number of false negative Markov pairs.`KLdist`

:a

`numerical`

, the KL distance, currently inactive.

- cnPlot
`signature(object="catNetworkDistance")`

: Draw some distance plots.

N. Balov

`catNetwork-class`

, `catNetworkEvaluate-class`

, `cnCompare`

, `cnPlot`

[Package *catnet* version 1.15.7 Index]