catNetworkDistance-class {catnet}R Documentation

Class "catNetworkDistance"

Description

This class contains a list of catNetworks and it is the output format of cnEvaluate function

Details

See in the manual of cnCompare function for description of different distance criteria.

Slots

hamm:

an integer, the hamming distance between the parent matrices of the found networks and the original network.

hammexp:

an integer, the hamming distance between the exponents of the parent matrices.

tp:

an integer, the number of true positives directed edges.

fp:

an integer, the number of false positives directed edges.

fn:

an integer, the number of false negatives directed edges.

sp:

a numeric, the specificity.

sn:

a numeric, the sensitivity.

fscore:

a numeric, the F-score.

skel.tp:

an integer, the number of true positives undirected edges.

skel.fp:

an integer, the number of false positives undirected edges.

skel.fn:

an integer, the number of false negatives undirected edges.

order.fp:

an integer, the number of false positive order relations.

order.fn:

an integer, the number of false negative order relations.

markov.fp:

an integer, the number of false positive Markov pairs.

markov.fn:

an integer, the number of false negative Markov pairs.

KLdist:

a numerical, the KL distance, currently inactive.

Methods

cnPlot

signature(object="catNetworkDistance"): Draw some distance plots.

Author(s)

N. Balov

See Also

catNetwork-class, catNetworkEvaluate-class, cnCompare, cnPlot


[Package catnet version 1.15.7 Index]