catmapdata {catmap}

Example catmap Data

Description

An example data set for use with catmap. All input data should have the header as part of the file and either 0 or NA values for entries not relevant to that particular study design. For example, TDT studies should have the caserisk, controlrisk, casenotrisk and controlnotrisk values set to either 0 or NA.

Usage

catmapdata

Format

A data.frame with 5 observations and 8 variables.

• name: a factor with study name and optionally year of publication. NOTE: if year of publication is included there must be no space between study name and year. A comma or underscore works nicely (e.g., Abrams,2001 Peter,2002 Todd,2003 Wei,2007 Yu,2007)

• study: a numeric vector containing 1 if the study is TDT and 2 if the study is case-control

• t: a numeric vector containing counts of alleles transmitted in the TDT study

• nt: a numeric vector containing counts of alleles not transmitted in the TDT study

• caserisk: a numeric vector containing counts of risk alleles in cases

• controlrisk: a numeric vector containing counts of risk alleles in controls

• casenotrisk: a numeric vector containing counts of non-risk alleles in cases

• controlnotrisk: a numeric vector containing counts of non-risk alleles in controls

Author(s)

Algorithm designed and implemented by Kristin K. Nicodemus. Code modified and updated by Thom Quinn.

See Also

catmap, catmap.forest, catmap.sense, catmap.cumulative, catmap.funnel