stat_collect {cRegulome}R Documentation

Collect data from SQLite database

Description

Not meant to be called directly by the user.

Usage

stat_collect(conn, study, stat, type = "mir")

Arguments

conn

A connection such as this returned by dbConnect

study

A character vector of The Cancer Genome Atlas (TCGA) study identifiers. To view the available studies in TCGA project, https://tcga-data.nci.nih.gov/docs/publications/tcga. When left to default NULL all available studies will be included.

stat

A string such as this returned by stat_make

type

A character string. Either 'mir' of 'tf'. Used to define columns and tables names.

Value

A data.frame


[Package cRegulome version 0.3.2 Index]