Obtain and Visualize Regulome-Gene Expression Correlations in Cancer


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Documentation for package ‘cRegulome’ version 0.3.2

Help Pages

cmicroRNA Construct cmicroRNA object
cor_hist A histogram of the correlations of microRNA or tf sets
cor_igraph Make an igraph object
cor_joy A joy plot of correlation of microRNA or tf sets
cor_plot Plot method for cmicroRNA and cTF objects
cor_prep Prepare correlation data for plotting
cor_tidy Tidy cmicroRNA and cTF objects
cor_upset 'upset' plot of microRNA or tf sets
cor_venn_diagram Venn Diagram of microRNA or transcription factor correlated features
cRegulome 'cRegulome' package
cTF Construct cTF object
get_db Get cRegulome.db file
get_mir Get microRNA correlations from cRegulome.db
get_tf Get transcription factor correlations from cRegulome.db
stat_collect Collect data from SQLite database
stat_collect_targets Collect target features from SQLite database
stat_make Make A SQL statement
stat_make_targets Make A SQL statement to extract target features