Bayesian Inference on the Ratio of Two Poisson Rates

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Documentation for package ‘brr’ version 1.0.0

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B C D F G I M P Q R S

brr-package Bayesian inference on the ratio of two Poisson rates

-- B --

Beta2Dist Beta distribution of the second kind
BNBDist Beta-negative binomial distribution
Brr Creation and summary of a 'brr' object
brr Bayesian inference on the ratio of two Poisson rates
brr_estimates Inference summaries
brr_intervals Inference summaries

-- C --

coef.brr Credibility intervals and estimates
confint.brr Credibility intervals and estimates

-- D --

dbeta2 Beta distribution of the second kind
dbeta_nbinom Beta-negative binomial distribution
dGB2 Gamma-Beta2 distribution
dGIB Gamma-Inverse Beta distribution
dPGB2 Poisson-Gamma-Beta2 distribution
dPGIB Poisson-Gamma-Inverse Beta distribution
dpost Prior and posterior distributions
dpost_lambda Posterior distribution on the incidence rate in the treated group
dpost_mu Posterior distribution on the rate in the control group
dpost_phi Posterior distribution on the relative risk and the vaccine efficacy
dpost_VE Posterior distribution on the relative risk and the vaccine efficacy
dpost_x Posterior predictive distribution of the count in the treated group
dpost_y Posterior predictive distribution of the count in the control group
dprior Prior and posterior distributions
dprior_lambda Prior distribution on the incidence rate in the treated group
dprior_mu Prior distribution on the rate in the control group
dprior_phi Prior distribution on the relative risk and the vaccine efficacy
dprior_VE Prior distribution on the relative risk and the vaccine efficacy
dprior_x Prior predictive distribution of the count in the treated group
dprior_x_given_y Prior predictive distribution of the count x in the treated group conditionally to the count y in the treated group
dprior_y Prior predictive distribution of the count in the control group

-- F --

FrequentistInference Frequentist inference about the relative risk

-- G --

GB2Dist Gamma-Beta2 distribution
GIBDist Gamma-Inverse Beta distribution

-- I --

Inference Inference summaries
inference.brr Credibility intervals and estimates
Intrinsic2Inference Intrinsic inference on the rates ratio based on the second intrinsic discrepancy.
intrinsic2_bounds Intrinsic inference on the rates ratio based on the second intrinsic discrepancy.
intrinsic2_discrepancy Second intrinsic discrepancy
intrinsic2_estimate Intrinsic inference on the rates ratio based on the second intrinsic discrepancy.
intrinsic2_H0 Intrinsic inference on the rates ratio based on the second intrinsic discrepancy.
intrinsic2_phi0 Intrinsic inference on the rates ratio based on the second intrinsic discrepancy.
intrinsic2_phi0_sims Intrinsic inference on the rates ratio based on the second intrinsic discrepancy.
IntrinsicInference Intrinsic inference on the rate ratio.
intrinsic_bounds Intrinsic inference on the rate ratio.
intrinsic_discrepancy Intrinsic discrepancy
intrinsic_estimate Intrinsic inference on the rate ratio.
intrinsic_H0 Intrinsic inference on the rate ratio.
intrinsic_phi0 Intrinsic inference on the rate ratio.
intrinsic_phi0_sims Intrinsic inference on the rate ratio.

-- M --

moment_GB2 Gamma-Beta2 distribution

-- P --

pbeta2 Beta distribution of the second kind
pbeta_nbinom Beta-negative binomial distribution
pGB2 Gamma-Beta2 distribution
PGB2Dist Poisson-Gamma-Beta2 distribution
PGIBDist Poisson-Gamma-Inverse Beta distribution
plot.brr plot brr
Posterior_lambda Posterior distribution on the incidence rate in the treated group
Posterior_mu Posterior distribution on the rate in the control group
Posterior_phi Posterior distribution on the relative risk and the vaccine efficacy
Post_x Posterior predictive distribution of the count in the treated group
Post_y Posterior predictive distribution of the count in the control group
pPGB2 Poisson-Gamma-Beta2 distribution
pPGIB Poisson-Gamma-Inverse Beta distribution
ppost Prior and posterior distributions
ppost_phi Posterior distribution on the relative risk and the vaccine efficacy
ppost_VE Posterior distribution on the relative risk and the vaccine efficacy
ppost_x Posterior predictive distribution of the count in the treated group
ppost_y Posterior predictive distribution of the count in the control group
pprior Prior and posterior distributions
pprior_lambda Prior distribution on the incidence rate in the treated group
pprior_mu Prior distribution on the rate in the control group
pprior_phi Prior distribution on the relative risk and the vaccine efficacy
pprior_VE Prior distribution on the relative risk and the vaccine efficacy
pprior_x Prior predictive distribution of the count in the treated group
pprior_x_given_y Prior predictive distribution of the count x in the treated group conditionally to the count y in the treated group
pprior_y Prior predictive distribution of the count in the control group
predict.brr Credibility intervals and estimates
print.coef.brr Credibility intervals and estimates
print.confint.brr Credibility intervals and estimates
print.predict.brr Credibility intervals and estimates
print.summary.brr Creation and summary of a 'brr' object
PriorAndPosterior Prior and posterior distributions
Prior_lambda Prior distribution on the incidence rate in the treated group
Prior_mu Prior distribution on the rate in the control group
Prior_phi Prior distribution on the relative risk and the vaccine efficacy
Prior_x Prior predictive distribution of the count in the treated group
Prior_x_given_y Prior predictive distribution of the count x in the treated group conditionally to the count y in the treated group
Prior_y Prior predictive distribution of the count in the control group

-- Q --

qbeta2 Beta distribution of the second kind
qbeta_nbinom Beta-negative binomial distribution
qGB2 Gamma-Beta2 distribution
qPGB2 Poisson-Gamma-Beta2 distribution
qPGIB Poisson-Gamma-Inverse Beta distribution
qpost Prior and posterior distributions
qpost_phi Posterior distribution on the relative risk and the vaccine efficacy
qpost_VE Posterior distribution on the relative risk and the vaccine efficacy
qpost_x Posterior predictive distribution of the count in the treated group
qpost_y Posterior predictive distribution of the count in the control group
qprior Prior and posterior distributions
qprior_mu Prior distribution on the rate in the control group
qprior_phi Prior distribution on the relative risk and the vaccine efficacy
qprior_VE Prior distribution on the relative risk and the vaccine efficacy
qprior_x Prior predictive distribution of the count in the treated group
qprior_x_given_y Prior predictive distribution of the count x in the treated group conditionally to the count y in the treated group
qprior_y Prior predictive distribution of the count in the control group

-- R --

rbeta2 Beta distribution of the second kind
rbeta_nbinom Beta-negative binomial distribution
rGB2 Gamma-Beta2 distribution
rGIB Gamma-Inverse Beta distribution
rPGB2 Poisson-Gamma-Beta2 distribution
rPGIB Poisson-Gamma-Inverse Beta distribution
rpost Prior and posterior distributions
rpost_lambda Posterior distribution on the incidence rate in the treated group
rpost_mu Posterior distribution on the rate in the control group
rpost_phi Posterior distribution on the relative risk and the vaccine efficacy
rpost_x Posterior predictive distribution of the count in the treated group
rpost_y Posterior predictive distribution of the count in the control group
rprior Prior and posterior distributions
rprior_lambda Prior distribution on the incidence rate in the treated group
rprior_mu Prior distribution on the rate in the control group
rprior_phi Prior distribution on the relative risk and the vaccine efficacy
rprior_x Prior predictive distribution of the count in the treated group
rprior_x_given_y Prior predictive distribution of the count x in the treated group conditionally to the count y in the treated group
rprior_y Prior predictive distribution of the count in the control group
rr_intervals Frequentist inference about the relative risk
rr_interval_binomial Frequentist inference about the relative risk
rr_interval_SK Frequentist inference about the relative risk

-- S --

sbeta_nbinom Beta-negative binomial distribution
spost Prior and posterior distributions
spost_lambda Posterior distribution on the incidence rate in the treated group
spost_mu Posterior distribution on the rate in the control group
spost_phi Posterior distribution on the relative risk and the vaccine efficacy
spost_x Posterior predictive distribution of the count in the treated group
spost_y Posterior predictive distribution of the count in the control group
sprior Prior and posterior distributions
sprior_lambda Prior distribution on the incidence rate in the treated group
sprior_mu Prior distribution on the rate in the control group
sprior_phi Prior distribution on the relative risk and the vaccine efficacy
sprior_x Prior predictive distribution of the count in the treated group
sprior_x_given_y Prior predictive distribution of the count x in the treated group conditionally to the count y in the treated group
sprior_y Prior predictive distribution of the count in the control group
summary.brr Creation and summary of a 'brr' object
summary_beta2 Beta distribution of the second kind
summary_beta_nbinom Beta-negative binomial distribution
summary_gamma Summary of a Gamma distribution
summary_GB2 Gamma-Beta2 distribution
summary_GIB Gamma-Inverse Beta distribution
summary_nbinom Summary of a Negative Binomial distribution
summary_PGB2 Poisson-Gamma-Beta2 distribution
summary_PGIB Poisson-Gamma-Inverse Beta distribution