| RNA_halflife_comparison_HK {bridger2} | R Documentation |
test BRIC-seq dataset for RNA half-life comparison using House-keeping genes.
Description
A dataset containing the RPKM for each time point and information column about 200 genes + house-keeping genes. The variables are as follows:
Usage
RNA_halflife_comparison_HK
Format
A data frame with 200 rows and 20 variables:
- gr_id
Group id
- symbol
Gene symbol
- accession_id
Gene accession id (RefSeq)
- locus
Genome locus
- CTRL_1_0h
RPKM value at 0h in control condition
- CTRL_1_1h
RPKM value at 1h in control condition
- CTRL_1_2h
RPKM value at 2h in control condition
- CTRL_1_4h
RPKM value at 4h in control condition
- CTRL_1_8h
RPKM value at 8h in control condition
- CTRL_1_12h
RPKM value at 12h in control condition
- gr_id
Group id
- symbol
Gene symbol
- accession_id
Gene accession id (RefSeq)
- locus
Genome locus
- KD_1_0h
RPKM value at 0h in knockdown condition
- KD_1_1h
RPKM value at 1h in knockdown condition
- KD_1_2h
RPKM value at 2h in knockdown condition
- KD_1_4h
RPKM value at 4h in knockdown condition
- KD_1_8h
RPKM value at 8h in knockdown condition
- KD_1_12h
RPKM value at 12h in knockdown condition