summary.swap {bqtl}R Documentation

Summarize Gibbs samples for a k-gene model

Description

Calculate marginal posteriors for location, posterior means for coefficients, and the Bayes Factor for k vs k-1 genes

Usage

## S3 method for class 'swap'
summary(object, method=NULL, ncoef=length(object$alt.coef), nloc=object$nloc,...)

Arguments

object

The result of swap

method

Optional. One of the supported methods, see make.analysis.obj

ncoef

Optional. The number of coefficients in the class of models. Typically, 2*nloc for method=="F2" and nloc for all other methods

nloc

Optional. The number of loci in the sample space.

...

ignored

Value

A list with components:

loc.posterior

A vector of (marginal) posterior odds for each locus compared to a no gene model

coefs

Posterior means of coefficients.

ratio

A list with components mean, an estimate of the Bayes Factor for k versus k-1 gene models, and var, an estimate of its variance.

Author(s)

Charles C. Berry cberry@ucsd.edu


[Package bqtl version 1.0-33 Index]