summary.swap {bqtl} R Documentation

## Summarize Gibbs samples for a k-gene model

### Description

Calculate marginal posteriors for location, posterior means for coefficients, and the Bayes Factor for k vs k-1 genes

### Usage

## S3 method for class 'swap'
summary(object, method=NULL, ncoef=length(object$alt.coef), nloc=object$nloc,...)


### Arguments

 object The result of swap method Optional. One of the supported methods, see make.analysis.obj ncoef Optional. The number of coefficients in the class of models. Typically, 2*nloc for method=="F2" and nloc for all other methods nloc Optional. The number of loci in the sample space. ... ignored

### Value

A list with components:

 loc.posterior  A vector of (marginal) posterior odds for each locus compared to a no gene model coefs Posterior means of coefficients. ratio A list with components mean, an estimate of the Bayes Factor for k versus k-1 gene models, and var, an estimate of its variance.

### Author(s)

Charles C. Berry cberry@ucsd.edu

[Package bqtl version 1.0-33 Index]