summary.bqtl {bqtl}R Documentation

Summarize bqtl object

Description

Extract coefficients (and related stats), loglikelihood, and residual standard error of the trait.

Usage

## S3 method for class 'bqtl'
summary(object,...)

Arguments

object

The result of link{bqtl}

...

Currently not used

Value

A list containing

coefficients

Either a vector of regression coefficents, or if object was created via bqtl(...,return.hess=TRUE), then a matrix with coefficients, standard errors, t-statistics, and p-values

loglik

the loglikelihood or log posterior

std.res

The residual standard deviation of the trait

N

The counts of all observations, the number omitted, and the number used in the fit

Author(s)

Charles C. Berry cberry@ucsd.edu

Examples

data(little.ana.bc)
fit <- bqtl( bc.phenotype~locus(4)*locus(45), little.ana.bc,
return.hess=TRUE )
summary(fit)


[Package bqtl version 1.0-33 Index]