myGene {bossR}

clinical dataset

Description

This data set gives the expression levels of gene data, overall survival time, and censoring status from 500 lung adenocarcinoma cases.

Usage

myGene

Format

A dataframe containing 500 observations of 3 variables.

Source

raw survival data come from https://tau.cmmt.ubc.ca/cSurvival/project_data/TCGA-LUAD/df_survival_o.csv and raw gene expression data come from https://tau.cmmt.ubc.ca/cSurvival/project_data/TCGA-LUAD/df_gene.csv

References

Xuanjin Cheng, Yongxing Liu, Jiahe Wang, Yujie Chen, Andrew Gordon Robertson, Xuekui Zhang, Steven J M Jones, and Stefan Taubert. (2022) cSurvival: a web resource for biomarker interactions in cancer outcomes and in cell lines. Briefings in Bioinformatics.