network.stability.output {bootcluster}R Documentation

Plot method for objests from threshold.select

Description

Plot method for objests from threshold.select

Usage

network.stability.output(input, optimal.only = FALSE)

Arguments

input

a list of results from function threshold.select

optimal.only

a logical value indicating whether only plot the network with optimal threshold or not. The default is False, generating all network figures with a large number of nodes could take some time.

Details

network.stability.output is used to generate a series of network plots based on the given threshold.seq,where the nodes are colored by the level of stability. The network with optimal threshold value selected by function threshold.select is colored as red.

Value

Plot of network figures

Author(s)

Mingmei Tian

References

A framework for stability-based module detection in correlation graphs. Mingmei Tian,Rachael Hageman Blair,Lina Mu, Matthew Bonner, Richard Browne and Han Yu.

Examples


set.seed(1)
data(wine)
x0 <- wine[1:50,]

mytest<-threshold.select(data.input=x0,threshold.seq=seq(0.1,0.5,by=0.05), B=20, 
cor.method='pearson',large.size=0,
PermuNo = 10,
no_cores=1,
scheme_2 = FALSE)
network.stability.output(mytest)


[Package bootcluster version 0.2.5 Index]