write_xgmml {bnstruct} | R Documentation |
XGMML
file.Write a network on disk, saving it in an XGMML
file,
for importing it in Cytoscape.
write_xgmml( x, path = "./network", write.wpdag = FALSE, node.col = rep("white", num.nodes(x)), frac = 0.2, max.weight = max(wpdag(x)) ) ## S4 method for signature 'BN' write_xgmml( x, path = "./network", write.wpdag = FALSE, node.col = rep("white", num.nodes(x)), frac = 0.2, max.weight = max(wpdag(x)) )
x |
the |
path |
file name with relative or absolute path to be written. |
write.wpdag |
write the weighted PDAG computed using bootstrap samples or the MMPC structure algorithm, instead of the normaldag (default FALSE). |
node.col |
vector of colors for each node of the network (in R colornames). |
frac |
minimum fraction [0,1] of presence of an edge to be plotted (used in case of |
max.weight |
maximum possible weight of an edge (used in case of |