calcWHPT_AB {biotic} | R Documentation |
Calculate abundance-weighted WHPT indices
Description
Calculates WHPT abundance-weighted ASPT and N-taxa indices for invertebrate samples.
Usage
calcWHPT_AB(df, type = "num")
Arguments
df |
A dataframe containing list of taxa in first column, followed by columns of abundances with sample names in header row. |
type |
Indicates format of data. Options are "num" for numeric data, "log" for integer log abundance categories (1-5) or "alpha" for alphabetic abundance categories (A-E). Default value is "num". |
Value
A data frame consisting of columns of index values with samples in rows.
Examples
# calculate the WHPT abundance-weighted indices for the River Almond dataset
# data are numeric abundances, so type is "num" (can be omitted)
calcWHPT_AB(almond, "num")
[Package biotic version 0.1.2 Index]