summary_cds {biomartr} | R Documentation |
Retrieve summary statistics for a coding sequence (CDS) file
Description
A summary statistics of specific CDS features is returned.
Usage
summary_cds(file, organism)
Arguments
file |
file path to a CDS file in |
organism |
character string specifying the organism at hand. |
Details
The summary statistics include:
-
total_seqs
: -
nnn_abs
: The total number of NNN's (over all chromosomes/scaffolds/contigs) in all coding sequences combined -
nnn_perc
: The percentage (relative frequency) of NNN's (over all chromosomes/scaffolds/contigs) compared to the total number of nucleotides of all coding sequences
Author(s)
Hajk-Georg Drost
See Also
getCollection
, getCDS
, read_cds
, summary_genome
[Package biomartr version 1.0.7 Index]