getSummaryFile {biomartr}

Helper function to retrieve the assembly_summary.txt file from NCBI

Description

Retrieval function of the assembly_summary.txt file from NCBI.

Usage

getSummaryFile(db, kingdom, file = assemblies_info_path(db, kingdom))

Arguments

db

database name. E.g. refseq or genbank.

kingdom

kingdom for which assembly_summary.txt file shall be retrieved. See also getKingdoms.

file

path, local path to total summary file, default is in tmp folder.

Author(s)

Hajk-Georg Drost

See Also

getKingdomAssemblySummary, getMetaGenomeSummary

Examples

## Not run: 
test <- getSummaryFile("refseq","plant")
test

## End(Not run)