getMetaGenomeAnnotations {biomartr} | R Documentation |
Retrieve annotation *.gff files for metagenomes from NCBI Genbank
Description
Retrieve available annotation *.gff files for metagenomes
from NCBI Genbank. NCBI Genbank allows users
to download entire metagenomes and their annotations of several metagenome
projects. This function downloads available metagenomes that can then be
downloaded via getMetaGenomes
.
Usage
getMetaGenomeAnnotations(
name,
path = file.path("_ncbi_downloads", "metagenome", "annotations")
)
Arguments
name |
metagenome name retrieved by |
path |
a character string specifying the location (a folder)
in which the corresponding metagenome annotations shall be stored.
Default is
|
Author(s)
Hajk-Georg Drost
See Also
getMetaGenomes
, listMetaGenomes
,
getGFF
Examples
## Not run:
# Frist, retrieve a list of available metagenomes
listMetaGenomes()
# Now, retrieve the 'human gut metagenome'
getMetaGenomeAnnotations(name = "human gut metagenome")
## End(Not run)
[Package biomartr version 1.0.7 Index]