getAttributes {biomartr} | R Documentation |
Retrieve All Available Attributes for a Specific Dataset
Description
This function queries the BioMart Interface and returns a table storing all available attributes for a specific dataset.
Usage
getAttributes(mart, dataset, mute_citation = FALSE)
Arguments
mart |
a character string specifying the database (mart) for which datasets shall be listed. |
dataset |
a character string specifying the dataset for which attributes shall be listed. |
mute_citation |
logical value indicating whether citation message should be muted. |
Author(s)
Hajk-Georg Drost
See Also
Other biomaRt:
biomart()
,
getDatasets()
,
getMarts()
,
organismBM()
,
organismFilters()
Examples
## Not run:
# search for available datasets
getMarts()
# choose database (mart): ENSEMBL_MART_ENSEMBL
# and get a table of all available datasets from this BioMart database
head(getDatasets(mart = "ENSEMBL_MART_ENSEMBL"), 10)
# choose dataset: "hsapiens_gene_ensembl"
head(getAttributes(mart = "ENSEMBL_MART_ENSEMBL",
dataset = "hsapiens_gene_ensembl") , 5)
## End(Not run)
[Package biomartr version 1.0.7 Index]