FitSecondaryGrowth {biogrowth}R Documentation

FitSecondaryGrowth class

Description

The FitSecondaryGrowth class contains a model fitted to a set of growth rates gathered under a variety of static conditions. Its constructor is fit_secondary_growth().

It is a subclass of list with the items:

Usage

## S3 method for class 'FitSecondaryGrowth'
print(x, ...)

## S3 method for class 'FitSecondaryGrowth'
plot(x, y = NULL, ..., which = 1, add_trend = FALSE, add_segment = FALSE)

## S3 method for class 'FitSecondaryGrowth'
summary(object, ...)

## S3 method for class 'FitSecondaryGrowth'
residuals(object, ...)

## S3 method for class 'FitSecondaryGrowth'
coef(object, ...)

## S3 method for class 'FitSecondaryGrowth'
vcov(object, ...)

## S3 method for class 'FitSecondaryGrowth'
deviance(object, ...)

## S3 method for class 'FitSecondaryGrowth'
fitted(object, ...)

## S3 method for class 'FitSecondaryGrowth'
predict(object, newdata = NULL, ...)

## S3 method for class 'FitSecondaryGrowth'
logLik(object, ...)

## S3 method for class 'FitSecondaryGrowth'
AIC(object, ..., k = 2)

Arguments

x

An instance of FitSecondaryGrowth.

...

ignored

y

ignored.

which

A numeric with the type of plot. 1 for obs versus predicted (default), 2 for gamma curve

add_trend

Whether to add a trend line (only for which=2)

add_segment

Whether to join the observed and fitted points (only for which=2)

object

an instance of FitSecondaryGrowth

newdata

A tibble describing the environmental conditions as in fit_secondary_growth(). If NULL, it uses the same conditions as for model fitting (default).

k

penalty for the parameters (k=2 by default)

Methods (by generic)


[Package biogrowth version 1.0.1 Index]