FitIsoGrowth {biogrowth}R Documentation

FitIsoGrowth class

Description

[Superseded]

The class FitIsoGrowth has been superseded by the top-level class GrowthFit, which provides a unified approach for growth modelling.

Still, it is still returned if the superseded fit_isothermal_growth() is called.

It is a subclass of list with the items:

Usage

## S3 method for class 'FitIsoGrowth'
print(x, ...)

## S3 method for class 'FitIsoGrowth'
plot(
  x,
  y = NULL,
  ...,
  line_col = "black",
  line_size = 1,
  line_type = 1,
  point_col = "black",
  point_size = 3,
  point_shape = 16
)

## S3 method for class 'FitIsoGrowth'
summary(object, ...)

## S3 method for class 'FitIsoGrowth'
residuals(object, ...)

## S3 method for class 'FitIsoGrowth'
coef(object, ...)

## S3 method for class 'FitIsoGrowth'
vcov(object, ...)

## S3 method for class 'FitIsoGrowth'
deviance(object, ...)

## S3 method for class 'FitIsoGrowth'
fitted(object, ...)

## S3 method for class 'FitIsoGrowth'
predict(object, times = NULL, ...)

## S3 method for class 'FitIsoGrowth'
logLik(object, ...)

## S3 method for class 'FitIsoGrowth'
AIC(object, ..., k = 2)

Arguments

x

The object of class FitIsoGrowth to plot.

...

ignored

y

ignored

line_col

Aesthetic parameter to change the colour of the line geom in the plot, see: geom_line()

line_size

Aesthetic parameter to change the thickness of the line geom in the plot, see: geom_line()

line_type

Aesthetic parameter to change the type of the line geom in the plot, takes numbers (1-6) or strings ("solid") see: geom_line()

point_col

Aesthetic parameter to change the colour of the point geom, see: geom_point()

point_size

Aesthetic parameter to change the size of the point geom, see: geom_point()

point_shape

Aesthetic parameter to change the shape of the point geom, see: geom_point()

object

an instance of FitIsoGrowth

times

numeric vector describing the time points for the prediction. If NULL (default), uses the same points as those used for fitting.

k

penalty for the parameters (k=2 by default)

Methods (by generic)


[Package biogrowth version 1.0.1 Index]